Molecular Detection and Comparative Sequence Analysis of Viruses Infecting Fig Trees in Turkey

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dc.authoridElci, Eminur/0000-0002-6434-6321
dc.authoridULUBAS SERCE, CIGDEM/0000-0001-5337-5883
dc.contributor.authorElci, Eminur
dc.contributor.authorSerce, Cigdem Ulubas
dc.contributor.authorGazel, Mona
dc.contributor.authorCaglayan, Kadriye
dc.date.accessioned2024-09-18T20:20:09Z
dc.date.available2024-09-18T20:20:09Z
dc.date.issued2012
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractSeveral viruses infecting fig trees in Turkey have been identified recently. The samples were collected from the commonest fig cultivars showing typical mosaic symptoms and from symptomless plants from different fig growing regions of Turkey. They were tested for Fig leaf mottle-associated virus 1-2 (FLMaV1-2), Fig mosaic virus (FMV), Fig latent virus-1 (FLV-1), Fig mild mottle-associated virus (FMMaV), Arkansas fig closterovirus 1-2 (AFCV1-2), Fig badnavirus-1 (FBV-1) and Fig cryptic virus (FCV) by PCR and sequence analyses. One hundred fig trees were tested, and 83% of tested samples were found to be infected by at least one virus. Complex infections were detected in most of the samples, and the most common viruses were FBV-1 and FMV with 82 and 79% infection ratios, respectively. The sequence analyses confirmed virus identity except for AFCV-1 for which no sequence data are available in GenBank. Based on phylogenetic analysis, the sequences clustered into seven groups: FLV-1, FMMaV, FBV-1, FCV, FMV, AFCV-1, FLMaV-1, as expected, and no correlation was found between Turkish isolates depending on cultivars and provinces for these viruses.en_US
dc.description.sponsorshipMustafa Kemal University-BAP [01M0112]; TUBITAK, Turkey [1110827]en_US
dc.description.sponsorshipThe authors thank Dr. Angelantonia Minafra from Mediterranean Agronomic Institute of Bari (Italy) for providing positive isolates of newly described fig viruses and also negative control. This study was partly supported by Mustafa Kemal University-BAP (01M0112) and TUBITAK (1110827), Turkey.en_US
dc.identifier.doi10.1111/j.1439-0434.2012.01921.x
dc.identifier.endpage423en_US
dc.identifier.issn0931-1785
dc.identifier.issn1439-0434
dc.identifier.issue7-8en_US
dc.identifier.scopus2-s2.0-84863502920en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage418en_US
dc.identifier.urihttps://doi.org/10.1111/j.1439-0434.2012.01921.x
dc.identifier.urihttps://hdl.handle.net/20.500.12483/10076
dc.identifier.volume160en_US
dc.identifier.wosWOS:000305897900015en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherWileyen_US
dc.relation.ispartofJournal of Phytopathologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectFigen_US
dc.subjectvirusesen_US
dc.subjectcDNAen_US
dc.subjectPCRen_US
dc.subjectsequencingen_US
dc.subjectphylogenetic analysisen_US
dc.subjectTurkeyen_US
dc.titleMolecular Detection and Comparative Sequence Analysis of Viruses Infecting Fig Trees in Turkeyen_US
dc.typeArticleen_US

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