Genetic diversity and a long evolutionary history of plum pox virus strain rec in Turkey

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dc.authoridGurcan, Kahraman/0000-0002-2120-2563
dc.authoridTeber, Saffet/0000-0002-9987-3287
dc.contributor.authorGurcan, Kahraman
dc.contributor.authorTeber, Saffet
dc.contributor.authorAkbulut, Mikail
dc.contributor.authorCaglayan, Kadriye
dc.date.accessioned2024-09-18T20:59:07Z
dc.date.available2024-09-18T20:59:07Z
dc.date.issued2021
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractPlum pox virus strain Recombinant (PPV-Rec) is hypothetically considered as homologous recombinant between strains PPV-M and PPV-D. The nucleotide position 8450 up to end of genome is considered to come from PPV-M, and the remaining major genomic part is PPV-D-derived. It is regarded as third major PPV strain due to its wide distribution and prevalence in Europe. However, among over a thousand PPV isolates genetically identified in Turkey, only 10 of them (<1%) were characterized as PPV-Rec. The nearly complete genome of eight of the PPV-Rec isolates from European part of Turkey were obtained and analyzed together with PPV-Rec isolates of other countries. All major genomic features were conserved among Turkish PPV-Rec isolates. The genetic diversity of PPV-Rec isolates in Turkey (n = 8, 0.015 +/- 0.001%) was found to be comparable to that observed for the isolates from eight countries (n = 10, 0.014 +/- 0.001%). Particularly, genetic diversity of the minor recombinant fragment for Turkish PPV-Rec isolates was apparently higher (0.016 +/- 0.001%) than the value for the 10 isolates from eight countries (0.011 +/- 0.001%). The high genetic diversity was also demonstrated by high phylogenetic variation in Turkish isolates, indicating a long evolutionary history of PPV-Rec isolates in Turkey. After including Turkish isolates in the recombination analysis, the major putative recombination event of PPV-Rec isolates with a breakpoint around position 8450 was identified again, however the other recently reported putative recombination events were not supported in this study by the algorithms implemented in the RDP software.en_US
dc.description.sponsorshipScientific and Technological Research Council of Turkey [118O548]; YOK 100/2000 doctorate programen_US
dc.description.sponsorshipThis studywas supported by The Scientific and Technological Research Council of Turkey (project number 118O548). Also, Saffet Teber is sponsored by a scholarship from the YOK 100/2000 doctorate program.en_US
dc.identifier.doi10.1007/s10658-021-02336-2
dc.identifier.endpage461en_US
dc.identifier.issn0929-1873
dc.identifier.issn1573-8469
dc.identifier.issue2en_US
dc.identifier.scopus2-s2.0-85110786713en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage453en_US
dc.identifier.urihttps://doi.org/10.1007/s10658-021-02336-2
dc.identifier.urihttps://hdl.handle.net/20.500.12483/12387
dc.identifier.volume161en_US
dc.identifier.wosWOS:000675044200001en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofEuropean Journal of Plant Pathologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectStone fruitsen_US
dc.subjectRecombinant strainen_US
dc.subjectGenetic diversity centeren_US
dc.titleGenetic diversity and a long evolutionary history of plum pox virus strain rec in Turkeyen_US
dc.typeArticleen_US

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