Transcriptome analysis of wheat inoculated with Fusarium graminearum

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dc.authoridUNVER, Turgay/0000-0001-6760-443X
dc.authoridILHAN, EMRE/0000-0002-8404-7900
dc.authoridAkdogan, Guray/0000-0002-1192-3615
dc.contributor.authorErayman, Mustafa
dc.contributor.authorTurktas, Mine
dc.contributor.authorAkdogan, Guray
dc.contributor.authorGurkok, Tugba
dc.contributor.authorInal, Behcet
dc.contributor.authorIshakoglu, Emre
dc.contributor.authorIlhan, Emre
dc.date.accessioned2024-09-18T20:16:37Z
dc.date.available2024-09-18T20:16:37Z
dc.date.issued2015
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractPlants are frequently exposed to microorganisms like fungi, bacteria, and viruses that cause biotic stresses. Fusarium head blight (FHB) is an economically risky wheat disease, which occurs upon Fusarium graminearum (Fg) infection. Moderately susceptible (cv. Mizrak 98) and susceptible (cv. Gun 91) winter type bread wheat cultivars were subjected to transcriptional profiling after exposure to Fg infection. To examine the early response to the pathogen in wheat, we measured gene expression alterations in mock and pathogen inoculated root crown of moderately susceptible (MS) and susceptible cultivars at 12 hours after inoculation (hai) using 12X135K microarray chip. The transcriptome analyses revealed that out of 39,179 transcripts, 3668 genes in microarray were significantly regulated at least in one time comparison. The majority of differentially regulated transcripts were associated with disease response and the gene expression mechanism. When the cultivars were compared, a number of transcripts and expression alterations varied within the cultivars. Especially membrane related transcripts were detected as differentially expressed. Moreover, diverse transcription factors showed significant fold change values among the cultivars. This study presented new insights to understand the early response of selected cultivars to the Fg at 12 hai. Through the KEGG analysis, we observed that the most altered transcripts were associated with starch and sucrose metabolism and gluconeogenesis pathways.en_US
dc.description.sponsorshipMustafa Kemal University Scientific Research [11241]; Turkish Academy of Sciences within the framework of the GEBIP programen_US
dc.description.sponsorshipWe wish to thank Prof. Dr. Berna Tunali (Dept. of Plant Protection, Faculty of Agriculture, University of 19 Mayis) for Fg. And Dr. Mortaza Hajyzadeh for his kind help during array hybridization and analysis. This study was supported by Mustafa Kemal University Scientific Research (Project No: 11241) and the Turkish Academy of Sciences within the framework of the GEBIP program.en_US
dc.identifier.doi10.3389/fpls.2015.00867
dc.identifier.issn1664-462X
dc.identifier.pmid26539199en_US
dc.identifier.scopus2-s2.0-84947794533en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.3389/fpls.2015.00867
dc.identifier.urihttps://hdl.handle.net/20.500.12483/9633
dc.identifier.volume6en_US
dc.identifier.wosWOS:000364345300001en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherFrontiers Media Saen_US
dc.relation.ispartofFrontiers in Plant Scienceen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectearly responseen_US
dc.subjectFusarium graminearumen_US
dc.subjectgene expression profilingen_US
dc.subjectmicroarrayen_US
dc.subjectTriticum aestivum Len_US
dc.titleTranscriptome analysis of wheat inoculated with Fusarium graminearumen_US
dc.typeArticleen_US

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