Genome-wide identification of salinity responsive HSP70s in common bean

Basit Öğe Kaydı
dc.authoridBuyuk, Ilker/0000-0002-0843-8299
dc.authoridILHAN, EMRE/0000-0002-8404-7900
dc.contributor.authorBuyuk, Ilker
dc.contributor.authorInal, Behcet
dc.contributor.authorIlhan, Emre
dc.contributor.authorTanriseven, Mehmet
dc.contributor.authorAras, Sumer
dc.contributor.authorErayman, Mustafa
dc.date.accessioned2024-09-18T20:26:50Z
dc.date.available2024-09-18T20:26:50Z
dc.date.issued2016
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractThe present study is aimed to identify and characterize HSP70 (PvHSP70) genes in two different common bean cultivars under salt stress. For this purpose various in silico methods such as RNAseq data and qRT-PCR analysis were used. A total of 24 candidate PvHSP70 gene were identified. Except for chromosome 4 and 7, these candidate PvHSP70 genes were distributed on the remaining chromosomes. While the lowest number of PvHSP70 genes was determined on chromosomes 1, 3, 5, 7, 9, 10 and 11 (one HSP70 gene), the highest number of PvHSP70s was on chromosomes 6 and 8 (seven HSP70 genes each). Three genes; PvHSP70-5, -9, and -10 were found to have no-introns. In addition, four tandemly and six segmentally duplicated gene couples were detected. A total of 13 PvHSP70 genes were targeted by miRNAs of 44 plant species and the most targeted genes were PvHSP70-5 and -23. The expression profile of PvHSP70 genes based on publicly available RNA-seq data was identified and salt treated leaf tissue was found to have more gene expression levels compared to the root. qRT-PCR analysis showed that the transcript concentrations of upregulated PvHSP70 genes in leaves of Zulbiye (sensitive) were mostly higher than those of Yakutiye (resistant). The present study revealed that PvHSP70 genes might play an important role in salt stress response for common bean cultivars and variability between cultivars also suggests that these genes could be used as functional markers for salt tolerance in common bean.en_US
dc.identifier.doi10.1007/s11033-016-4057-0
dc.identifier.endpage1266en_US
dc.identifier.issn0301-4851
dc.identifier.issn1573-4978
dc.identifier.issue11en_US
dc.identifier.pmid27558093en_US
dc.identifier.scopus2-s2.0-84983375998en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage1251en_US
dc.identifier.urihttps://doi.org/10.1007/s11033-016-4057-0
dc.identifier.urihttps://hdl.handle.net/20.500.12483/10561
dc.identifier.volume43en_US
dc.identifier.wosWOS:000387671100008en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofMolecular Biology Reportsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectHSP70en_US
dc.subjectGenome-wide analysisen_US
dc.subjectRNAseqen_US
dc.subjectqRT-PCRen_US
dc.subjectSalt stressen_US
dc.subjectPhaseolus vulgarisen_US
dc.titleGenome-wide identification of salinity responsive HSP70s in common beanen_US
dc.typeArticleen_US

Dosyalar

Orijinal paket
Listeleniyor 1 - 1 / 1
[ N/A ]
İsim:
Tam Metin / Full Text
Boyut:
2.1 MB
Biçim:
Adobe Portable Document Format
İndir

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayınlar Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu

We collect and process your personal information for the following purposes: Authentication, Preferences, Acknowledgement and Statistics.
To learn more, please read our privacy policy.

Customize