The "fish & chips" project: Microarrays as a tool for the identification of marine organisms in biodiversity and ecosystem research

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dc.authorscopusid6507023703
dc.authorscopusid23492300500
dc.authorscopusid23008155600
dc.authorscopusid6504495040
dc.authorscopusid23010035000
dc.authorscopusid23010541900
dc.authorscopusid6602693976
dc.contributor.authorKochzius, Marc
dc.contributor.authorKappel, Kristina
dc.contributor.authorDöbitz, Lutz
dc.contributor.authorSilkenbeumer, Nina
dc.contributor.authorNölte, Manfred
dc.contributor.authorWeber, Hannes
dc.contributor.authorHjörleifsdottir, Sigridur
dc.date.accessioned2024-09-19T15:41:18Z
dc.date.available2024-09-19T15:41:18Z
dc.date.issued2007
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.descriptionOCEANS 2007 - Europe -- 18 June 2007 through 21 June 2007 -- Aberdeen, Scotland -- 70650en_US
dc.description.abstractDNA microarrays are currently in use almost exclusively as research tools for gene expression analysis and their application for the identification of organisms is still in its infancy, only documented by a few studies on mammals, bacteria, and viruses. The "Fish & Chips" project aims to demonstrate that DNA chips can be a new innovative tool for the identification of marine animals and phytoplankton. To achieve this goal, fishes, invertebrates, and phytoplankton were sampled in European seas and taxonomically classified. Fragments of their mitochondrial 16S, cyt b, and COI genes and from the nuclear 18S genes were sequenced and served as molecular markers to enable probe design for the microarrays. An on-line data base containing the sequences and all relevant information of the samples has been implemented. A first prototype of a "Fish Chip",is based on more than 400 sequences from the 16S rRNA gene belonging to 46 species. A second microarray prototype serves to identify flatfishes from the North Sea based on COI-and 16S sequences from 70 individuals of 17 fish species. A "Phytoplankton Chip" is now available with probes for all microalgal classes and many toxic species, as well as a "Invertebrate Chip". The results show that this approach is feasible. © 2007 IEEE.en_US
dc.identifier.isbn1424406358
dc.identifier.isbn978-142440635-7
dc.identifier.scopus2-s2.0-36349011831en_US
dc.identifier.scopusqualityN/Aen_US
dc.identifier.urihttps://hdl.handle.net/20.500.12483/14174
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.relation.ispartofOCEANS 2007 - Europeen_US
dc.relation.publicationcategoryKonferans Öğesi - Uluslararası - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectDNA barcodingen_US
dc.subjectDNA chipsen_US
dc.subjectEuropean seasen_US
dc.subjectGenetic identificationen_US
dc.titleThe "fish & chips" project: Microarrays as a tool for the identification of marine organisms in biodiversity and ecosystem researchen_US
dc.typeConference Objecten_US

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