Phylogenetic analysis of partial sequences from Fig mosaic virus isolates in Turkey

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dc.authoridULUBAS SERCE, CIGDEM/0000-0001-5337-5883
dc.authoridElci, Eminur/0000-0002-6434-6321
dc.contributor.authorElci, Eminur
dc.contributor.authorSerce, Cigdem Ulubas
dc.contributor.authorCaglayan, Kadriye
dc.date.accessioned2024-09-18T20:06:18Z
dc.date.available2024-09-18T20:06:18Z
dc.date.issued2013
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractFig mosaic virus (FMV), which was described recently, is the only characterized causal agent of fig mosaic disease (FMD). It has six RNA segments and belongs to the Bunyaviridae family. In order to determine the genetic diversity of Turkish FMV isolates, the most common fig cultivars showing FMD symptoms were collected from different fig-growing provinces of Turkey. Nucleoprotein (Np) and Glycoprotein (Gp) gene-specific primers of FMV were used for RT-PCR analysis. According to RT-PCR results, 71 of 90 samples from 20 different cultivars and unknown fig seedlings were found to be infected by FMV. Among them, 41 isolates were sequenced and subjected to phylogenetic analyses based on the partial Gp and Np sequences at the amino acid level by the neighbor-joining method. The isolates showed more than 80% identity with reference FMV isolates (Acc. nos. FM991954.1 and FM864225.2). Based on phylogenetic analysis, the sequences clustered into two main groups for Np and Gp regions. Significant relationships between FMV isolates based on geographic origin and cultivars were not observed.en_US
dc.description.sponsorshipTUBITAK-TOVAG [111O827]; Mustafa Kemal University [BAP-1202M0113]; Scientific and Technological Research Council of Turkey (TUBITAK) [2214]en_US
dc.description.sponsorshipThe authors would like to thank Prof. Dr. Bryce W. Falk and Dr. Jeewan Jyot Walia from the University of California-Davis for their kind help during the experiments. The authors also thank Prof. Dr. Anne Frary from Izmir Institute of Technology for the English editing of the manuscript. Eminur (Barutcu) Elci is grateful to The Scientific and Technological Research Council of Turkey (TUBITAK) for International research fellowships (2214). This study was supported by TUBITAK-TOVAG 111O827 and Mustafa Kemal University-BAP-1202M0113 projects. Accession numbers: JQ173767-JQ173848en_US
dc.identifier.doi10.1007/s12600-013-0286-0
dc.identifier.endpage270en_US
dc.identifier.issn0334-2123
dc.identifier.issn1876-7184
dc.identifier.issue3en_US
dc.identifier.scopus2-s2.0-84879173100en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage263en_US
dc.identifier.urihttps://doi.org/10.1007/s12600-013-0286-0
dc.identifier.urihttps://hdl.handle.net/20.500.12483/8443
dc.identifier.volume41en_US
dc.identifier.wosWOS:000320443000004en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofPhytoparasiticaen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectBunyaviridaeen_US
dc.subjectFicus caricaen_US
dc.subjectFigen_US
dc.subjectGpen_US
dc.subjectNpen_US
dc.subjectRT-PCRen_US
dc.subjectSequence analysisen_US
dc.titlePhylogenetic analysis of partial sequences from Fig mosaic virus isolates in Turkeyen_US
dc.typeArticleen_US

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