Genome-wide fungal stress responsive miRNA expression in wheat

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dc.authoridEren, Abdil Hakan/0009-0000-0004-1732
dc.authoridOKAY, Sezer/0000-0003-0355-6672
dc.authoridILHAN, EMRE/0000-0002-8404-7900
dc.authoridUNVER, Turgay/0000-0001-6760-443X
dc.contributor.authorInal, Behcet
dc.contributor.authorTurktas, Mine
dc.contributor.authorEren, Hakan
dc.contributor.authorIlhan, Emre
dc.contributor.authorOkay, Sezer
dc.contributor.authorAtak, Mehmet
dc.contributor.authorErayman, Mustafa
dc.date.accessioned2024-09-18T20:25:15Z
dc.date.available2024-09-18T20:25:15Z
dc.date.issued2014
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractMicroRNAs (miRNAs) are small non-coding class of RNAs. They were identified in many plants with their diverse regulatory roles in several cellular and metabolic processes. A number of miRNAs were involved in biotic and abiotic stress responses. Here, fungal stress responsive wheat miRNAs were analyzed by using miRNA-microarray strategy. Two different fungi (Fusarium culmorum and Bipolaris sorokiniana) were inoculated on resistant and sensitive wheat cultivars. A total of 87 differentially regulated miRNAs were detected in the 8 x 15 K array including all of the available plant miRNAs. Using bioinformatics tools, the target transcripts of responsive miRNAs were predicted, and related biological processes and mechanisms were assessed. A number of the miRNAs such as miR2592s, miR869.1, miR169b were highly differentially regulated showing more than 200-fold change upon fungal-inoculation. Some of the miRNAs were identified as fungal-inoculation responsive for the first time. The analyses showed that some of the differentially regulated miRNAs targeted resistance-related genes such as LRR, glucuronosyl transferase, peroxidase and Pto kinase. The comparison of the two miRNA-microarray analyses indicated that fungal-responsive wheat miRNAs were differentially regulated in pathogen- and cultivar-specific manners.en_US
dc.description.sponsorshipTUBITAK [113O546]en_US
dc.description.sponsorshipThe study was funded by TUBITAK with Grant Number: 113O546.en_US
dc.identifier.doi10.1007/s00425-014-2153-8
dc.identifier.endpage1298en_US
dc.identifier.issn0032-0935
dc.identifier.issn1432-2048
dc.identifier.issue6en_US
dc.identifier.pmid25156489en_US
dc.identifier.scopus2-s2.0-84919912965en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage1287en_US
dc.identifier.urihttps://doi.org/10.1007/s00425-014-2153-8
dc.identifier.urihttps://hdl.handle.net/20.500.12483/10195
dc.identifier.volume240en_US
dc.identifier.wosWOS:000344752900011en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofPlantaen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectFungal stressen_US
dc.subjectMicroarrayen_US
dc.subjectMicro RNAen_US
dc.subjectWheaten_US
dc.titleGenome-wide fungal stress responsive miRNA expression in wheaten_US
dc.typeArticleen_US

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