Sequence variability of Hop stunt viroid isolates from stone fruits in Turkey

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dc.contributor.authorGazel, M.
dc.contributor.authorSerce, C. Ulubas
dc.contributor.authorCaglayan, K.
dc.contributor.authorFaggioli, E.
dc.date.accessioned2024-09-18T20:26:51Z
dc.date.available2024-09-18T20:26:51Z
dc.date.issued2008
dc.departmentHatay Mustafa Kemal Üniversitesien_US
dc.description.abstractHop stunt viroid (HSVd), genus Hostuviroid, family Pospiviroidae is a circular single-stranded RNA 294-303 nt in size, infecting a large number of woody hosts, such as grapevine, Citrus spp. and Prunus spp. In this study, we report the identification and molecular characterization of HSVd variants isolated in Turkey from different naturally infected Prunus sources, including apricot, plum and peach. We determined the nucleotide sequences of eleven isolates and found five new sequence variants of 296 (3 variants) or 297 (2 variants) nt, comparable in length to previously known HSVd isolates. Multiple alignments and pbylogenetic analyses showed that one apricot isolate (HSVd.AP1) clustered with the recombinant P-H/cit3 group, whereas all the others (one apricot; HSVd.AP23, two plum; HSVd.PL49 and HSVd.PL278 and one peach, HSVd.PE73) clustered with the Hop group, confirming the molecular variability of HSVd isolates. The sequence variability seems to be more related to the geographical origin of the isolates than to their hosts.en_US
dc.identifier.endpage28en_US
dc.identifier.issn1125-4653
dc.identifier.issn2239-7264
dc.identifier.issue1en_US
dc.identifier.scopus2-s2.0-77952480303en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage23en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12483/10562
dc.identifier.volume90en_US
dc.identifier.wosWOS:000254488200003en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofJournal of Plant Pathologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectHSVden_US
dc.subjectdetectionen_US
dc.subjectPCRen_US
dc.subjectcharacterizationen_US
dc.subjectfruit treesen_US
dc.subjectsequencingen_US
dc.subjectviroiden_US
dc.titleSequence variability of Hop stunt viroid isolates from stone fruits in Turkeyen_US
dc.typeArticleen_US

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