Genetic structure and diversity of Adonis L. (Ranunculaceae) populations collected from Turkey by inter-primer binding site (iPBS) retrotransposon markers

Basit Öğe Kaydı
dc.authorid0000-0003-2611-8034en_US
dc.authorid0000-0001-7927-1409en_US
dc.authorid0000-0002-8404-7900en_US
dc.authorid0000-0001-8169-2472en_US
dc.authorid0000-0002-4014-491Xen_US
dc.contributor.authorHossein Pour, Arash
dc.contributor.authorKarahan, Faruk
dc.contributor.authorİlhan, Emre
dc.contributor.authorİlçim, Ahmet
dc.contributor.authorHaliloğlu, Kamil
dc.date.accessioned2020-07-27T07:09:12Z
dc.date.available2020-07-27T07:09:12Z
dc.date.issued2019en_US
dc.departmentZiraat Fakültesien_US
dc.description.abstractThe genus Adonis L. is a member of Ranunculaceae and consists of perennial and annual herbaceous plants included in the tribe Adonideae under the subfamily Ranunculoideae. Botanically, Ranunculaceae comprises vital medicinal plants. Molecular markers are one of the most effective tools for exploring genetic variation that can enhance breeding efficiency. To identify the genetic diversity of 62 Adonis ecotypes collected from different regions in Turkey, the interprimer binding site (iPBS) retrotransposon system was used. Of the 83 iPBS primers used, 10 provided sufficient polymorphic data, generating a total of 204 alleles. The number of iPBS bands per individual was 3.29, and the number of alleles per polymorphic locus ranged from 8 to 35, with an average of 20.30. The average polymorphism percentage was 99.50%, and polymorphic information content ranged from 0.16 to 0.39. The highest average number of alleles, Nei’s genetic diversity (h), and Shannon’s information index (I) were obtained from A. volgensis species (1.64, 0.39, and 0.58,respectively), whereas the lowest values (1.41, 0.29, and 0.46, respectively) were found in A. flammea species. The analysis of molecular variance revealed significant variance within the population (71%), whereas no significant genetic variation was observed among the different species (29%). Cluster analysis according to unweighted pair-group mean average (UPGMA) divided 62 Adonis ecotypes into four major clusters. According to the principal coordinate analysis, the first three principal coordinates accounted for 81.51% of total variation. Genetic structure analysis of the studied germplasm using the Bayesian method revealed four subpopulations with an average of 0.2634 for expected heterozygosity and 0.2154 for population differentiation measurements. The results of this study suggested that iPBS markers could be used in the identification of genetic diversity among the Adonis species.en_US
dc.identifier.citationPOUR, A. H., Karahan, F., Ilhan, E., Ilcim, A., & HALİLOĞLU, K. (2019). Genetic structure and diversity of Adonis L.(Ranunculaceae) populations collected from Turkey by inter-primer binding site (iPBS) retrotransposon markers. Turkish Journal of Botany, 43(5), 585-596.en_US
dc.identifier.doi10.3906/bot-1810-1en_US
dc.identifier.endpage596en_US
dc.identifier.issn1300-008X
dc.identifier.issue5en_US
dc.identifier.scopus2-s2.0-85073447278en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage585en_US
dc.identifier.trdizinid336861en_US
dc.identifier.urihttps://dx.doi.org/10.3906/bot-1810-1
dc.identifier.urihttps://hdl.handle.net/20.500.12483/2940
dc.identifier.volume43en_US
dc.identifier.wosWOS:000484598500001en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakTR-Dizinen_US
dc.language.isoenen_US
dc.publisherKaradeniz Teknik Üniversitesien_US
dc.relation.ispartofTurkish Journal of Botanyen_US
dc.relation.publicationcategoryMakale - Ulusal Hakemli Dergi - Başka Kurum Yazarıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.rightsAttribution 3.0 United States*
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/us/*
dc.subjectAdonis L.en_US
dc.subjectiPBS markersen_US
dc.subjectGenetic diversityen_US
dc.subjectPopulation structureen_US
dc.subjectAMOVAen_US
dc.titleGenetic structure and diversity of Adonis L. (Ranunculaceae) populations collected from Turkey by inter-primer binding site (iPBS) retrotransposon markersen_US
dc.typeArticleen_US

Dosyalar

Orijinal paket
Listeleniyor 1 - 1 / 1
Küçük Resim
İsim:
Hossein-Poir,Arash2019.pdf
Boyut:
4.77 MB
Biçim:
Adobe Portable Document Format
Açıklama:
Tam Metin / Full Text
İndir
Lisans paketi
Listeleniyor 1 - 1 / 1
[ N/A ]
İsim:
license.txt
Boyut:
1.44 KB
Biçim:
Item-specific license agreed upon to submission
Açıklama:
İndir

Koleksiyon

TR-Dizin İndeksli Yayınlar Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu
WoS İndeksli Yayınlar Koleksiyonu